IL_9RU8_165

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

9RU8|1|L8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU8_165 not in the Motif Atlas

Homologous match to IL_8GLP_187

Geometric discrepancy: 0.0612

The information below is about IL_8GLP_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9RU8|1|L8|U|64
9RU8|1|L8|A|65
9RU8|1|L8|A|66
*
9RU8|1|L8|U|92
9RU8|1|L8|C|93
9RU8|1|L8|G|94
9RU8|1|L8|A|95

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LY

Large ribosomal subunit protein uL24

Chain Lh

60S ribosomal protein L35

Chain Lj

Large ribosomal subunit protein eL37