IL_9RU8_242

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9RU8|1|S2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU8_242 not in the Motif Atlas

Homologous match to IL_9PN5_226

Geometric discrepancy: 0.1443

The information below is about IL_9PN5_226

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RU8|1|S2|U|1720
9RU8|1|S2|U|1721
9RU8|1|S2|G|1722
*
9RU8|1|S2|U|1812
9RU8|1|S2|A|1813

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain Ln

Small ribosomal subunit protein eS32

Chain SX

Small ribosomal subunit protein uS12