IL_9RU9_012

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU9_012 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2503

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9RU9|1|L5|G|179
9RU9|1|L5|C|180
9RU9|1|L5|C|181
*
9RU9|1|L5|G|256
9RU9|1|L5|C|257

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35