IL_9RU9_039

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

9RU9|1|L5|G|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU9_039 not in the Motif Atlas

Homologous match to IL_8GLP_045

Geometric discrepancy: 0.1097

The information below is about IL_8GLP_045

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9RU9|1|L5|C|1096
9RU9|1|L5|C|1097
*
9RU9|1|L5|G|1198
9RU9|1|L5|G|1199
9RU9|1|L5|G|1200

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21