IL_9RU9_044

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9RU9|1|L5|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU9_044 not in the Motif Atlas

Homologous match to IL_8GLP_050

Geometric discrepancy: 0.0775

The information below is about IL_8GLP_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73464.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9RU9|1|L5|G|1360
9RU9|1|L5|G|1361
*
9RU9|1|L5|C|1376
9RU9|1|L5|G|1377
9RU9|1|L5|C|1378
9RU9|1|L5|C|1379

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

Large ribosomal subunit protein uL15