IL_9RU9_057

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

9RU9|1|L5|OMG|1625, 9RU9|1|L5|A|1637, 9RU9|1|L5|A|1638, 9RU9|1|L5|U|1639

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|G|1624
9RU9|1|L5|OMG|1625
9RU9|1|L5|G|1626
*
9RU9|1|L5|U|1636
9RU9|1|L5|A|1637
9RU9|1|L5|A|1638
9RU9|1|L5|U|1639
9RU9|1|L5|C|1640

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

Large ribosomal subunit protein eL37