IL_9RU9_113

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9RU9|1|L5|A2M|3785, 9RU9|1|L5|C|3791, 9RU9|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|C|3781
9RU9|1|L5|5MC|3782
9RU9|1|L5|A|3783
9RU9|1|L5|A|3784
9RU9|1|L5|A2M|3785
9RU9|1|L5|U|3786
9RU9|1|L5|G|3787
9RU9|1|L5|C|3788
9RU9|1|L5|C|3789
9RU9|1|L5|U|3790
9RU9|1|L5|C|3791
9RU9|1|L5|OMG|3792
*
9RU9|1|L5|OMC|3808
9RU9|1|L5|G|3809
9RU9|1|L5|C|3810
9RU9|1|L5|G|3811

Current chains

Chain L5

23S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA