IL_9RU9_127

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GG*(PSU)CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU9_127 not in the Motif Atlas

Homologous match to IL_9H3G_116

Geometric discrepancy: 0.1039

The information below is about IL_9H3G_116

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9RU9|1|L5|G|4400
9RU9|1|L5|G|4401
*
9RU9|1|L5|PSU|4442
9RU9|1|L5|C|4443
9RU9|1|L5|C|4444

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

60S ribosomal protein L10

Chain Lb

Large ribosomal subunit protein eL29