IL_9RU9_150

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU9_150 not in the Motif Atlas

Homologous match to IL_8GLP_166

Geometric discrepancy: 0.1033

The information below is about IL_8GLP_166

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9RU9|1|L5|G|4743
9RU9|1|L5|A|4744
9RU9|1|L5|G|4745
9RU9|1|L5|C|4746
*
9RU9|1|L5|G|4954
9RU9|1|L5|A|4955
9RU9|1|L5|A|4956
9RU9|1|L5|C|4957

Current chains

Chain L5

23S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lf

60S ribosomal protein L35a