IL_9RU9_199

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

9RU9|1|S2|A|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU9_199 not in the Motif Atlas

Geometric match to IL_9E6Q_027

Geometric discrepancy: 0.3682

The information below is about IL_9E6Q_027

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9RU9|1|S2|U|530
9RU9|1|S2|A|531
*
9RU9|1|S2|U|553
9RU9|1|S2|A|554
9RU9|1|S2|A|555

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein