IL_9RUC_024

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

9RUC|1|L5|A|932, 9RUC|1|L5|C|934, 9RUC|1|L5|A|935, 9RUC|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|A|732
9RUC|1|L5|A|733
9RUC|1|L5|G|734
9RUC|1|L5|G|735
*
9RUC|1|L5|C|928
9RUC|1|L5|A|929
9RUC|1|L5|G|930
9RUC|1|L5|C|931
9RUC|1|L5|A|932
9RUC|1|L5|G|933
9RUC|1|L5|C|934
9RUC|1|L5|A|935
9RUC|1|L5|C|936
9RUC|1|L5|U|937

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a