IL_9RUC_041

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUC_041 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.0405

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9RUC|1|L5|C|1551
9RUC|1|L5|G|1552
9RUC|1|L5|A|1553
9RUC|1|L5|A|1554
9RUC|1|L5|G|1555
*
9RUC|1|L5|U|1572
9RUC|1|L5|G|1573
9RUC|1|L5|G|1574
9RUC|1|L5|A|1575
9RUC|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a