IL_9RUC_063

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9RUC|1|L5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUC_063 not in the Motif Atlas

Homologous match to IL_8GLP_081

Geometric discrepancy: 0.1142

The information below is about IL_8GLP_081

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RUC|1|L5|G|1946
9RUC|1|L5|U|1947
9RUC|1|L5|G|1948
*
9RUC|1|L5|C|2035
9RUC|1|L5|C|2036

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LH

Large ribosomal subunit protein uL6

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein