IL_9RUC_160
3D structure
- PDB id
- 9RUC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUU*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RUC_160 not in the Motif Atlas
- Geometric match to IL_8OI5_115
- Geometric discrepancy: 0.1584
- The information below is about IL_8OI5_115
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 81
Unit IDs
9RUC|1|S2|G|108
9RUC|1|S2|U|109
9RUC|1|S2|U|110
*
9RUC|1|S2|G|351
9RUC|1|S2|U|352
9RUC|1|S2|C|353
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- Small ribosomal subunit protein uS17
Coloring options: