IL_9RUC_179

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9RUC|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUC_179 not in the Motif Atlas

Homologous match to IL_9H3G_189

Geometric discrepancy: 0.0393

The information below is about IL_9H3G_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9RUC|1|S2|G|665
9RUC|1|S2|U|666
9RUC|1|S2|U|667
9RUC|1|S2|A|668
9RUC|1|S2|A|669
9RUC|1|S2|A|670
9RUC|1|S2|A|671
*
9RUC|1|S2|U|1161
9RUC|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26