IL_9RUC_198

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

9RUC|1|S2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUC_198 not in the Motif Atlas

Geometric match to IL_9SUM_115

Geometric discrepancy: 0.3955

The information below is about IL_9SUM_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9RUC|1|S2|G|1203
9RUC|1|S2|A|1204
9RUC|1|S2|C|1205
*
9RUC|1|S2|G|1693
9RUC|1|S2|U|1694
9RUC|1|S2|A|1695
9RUC|1|S2|C|1696

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26