IL_9S1D_002

3D structure

PDB id

9S1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the methyltransferase ribozyme 1 with two 2'O-methylation (MTR1m2)

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GACCC*GACAAC

Length

11 nucleotides

Bulged bases

9S1D|1|C|A|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S1D_002 not in the Motif Atlas

Geometric match to IL_8ZAU_002

Geometric discrepancy: 0.1265

The information below is about IL_8ZAU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9S1D|1|B|G|14
9S1D|1|B|A|15
9S1D|1|B|C|16
9S1D|1|B|C|17
9S1D|1|B|C|18
*
9S1D|1|C|G|30
9S1D|1|C|A|31
9S1D|1|C|C|32
9S1D|1|C|A|33
9S1D|1|C|A|34
9S1D|1|C|C|35

Current chains

Chain B

Chains: B

Chain C

Chains: C

Nearby chains

Chain A

Chains: A