IL_9S3B_161

3D structure

PDB id

9S3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

9S3B|1|L5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3B_161 not in the Motif Atlas

Homologous match to IL_9H3G_145

Geometric discrepancy: 0.2875

The information below is about IL_9H3G_145

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9S3B|1|L5|G|5012
9S3B|1|L5|C|5013
9S3B|1|L5|A|5014
*
9S3B|1|L5|U|5035
9S3B|1|L5|C|5036

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24