IL_9S3C_109

3D structure

PDB id

9S3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9S3C|1|L5|A|3746, 9S3C|1|L5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3C_109 not in the Motif Atlas

Homologous match to IL_8GLP_117

Geometric discrepancy: 0.0402

The information below is about IL_8GLP_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9S3C|1|L5|U|3704
9S3C|1|L5|G|3705
*
9S3C|1|L5|U|3745
9S3C|1|L5|A|3746
9S3C|1|L5|A|3747
9S3C|1|L5|A|3748

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA