IL_9S3C_146

3D structure

PDB id

9S3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3C_146 not in the Motif Atlas

Homologous match to IL_8GLP_162

Geometric discrepancy: 0.0622

The information below is about IL_8GLP_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9S3C|1|L5|U|4638
9S3C|1|L5|G|4639
9S3C|1|L5|C|4640
*
9S3C|1|L5|G|4659
9S3C|1|L5|G|4660
9S3C|1|L5|G|4661

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31