IL_9S3D_047

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

9S3D|1|L5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3D_047 not in the Motif Atlas

Homologous match to IL_8GLP_055

Geometric discrepancy: 0.0473

The information below is about IL_8GLP_055

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9S3D|1|L5|G|1479
9S3D|1|L5|C|1480
*
9S3D|1|L5|G|1484
9S3D|1|L5|C|1485
9S3D|1|L5|C|1486

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Li

60S ribosomal protein L36