IL_9S7B_004

3D structure

PDB id

9S7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7B_004 not in the Motif Atlas

Geometric match to IL_8GLP_039

Geometric discrepancy: 0.1158

The information below is about IL_8GLP_039

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9S7B|1|A|U|1877
9S7B|1|A|U|1878
9S7B|1|A|G|1879
*
9S7B|1|A|C|1895
9S7B|1|A|U|1896
9S7B|1|A|A|1897

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35m

Chain F

Large ribosomal subunit protein uL4m

Chain M

Large ribosomal subunit protein uL15m

Chain g

Large ribosomal subunit protein mL49

Chain i

Large ribosomal subunit protein mL51

Chain o

Large ribosomal subunit protein mL63