IL_9S7C_070

3D structure

PDB id

9S7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7C_070 not in the Motif Atlas

Homologous match to IL_8B0X_017

Geometric discrepancy: 0.0935

The information below is about IL_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26900.3

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

6

Unit IDs

9S7C|1|AA|G|187
9S7C|1|AA|C|188
9S7C|1|AA|A|189
9S7C|1|AA|A|190
9S7C|1|AA|U|191
*
9S7C|1|AA|A|205
9S7C|1|AA|C|206

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AM

Small ribosomal subunit protein bS16m

Chain AT

Small ribosomal subunit protein mS25

Chain AU

Small ribosomal subunit protein mS26