IL_9S7D_041

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAACAGUACCUAACAAA*UCCUAAACUACCAAACCU

Length

35 nucleotides

Bulged bases

9S7D|1|A|C|2762, 9S7D|1|A|A|2764, 9S7D|1|A|A|2767, 9S7D|1|A|U|2781, 9S7D|1|A|A|2782, 9S7D|1|A|U|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S7D|1|A|A|2753
9S7D|1|A|A|2754
9S7D|1|A|A|2755
9S7D|1|A|C|2756
9S7D|1|A|A|2757
9S7D|1|A|G|2758
9S7D|1|A|U|2759
9S7D|1|A|A|2760
9S7D|1|A|C|2761
9S7D|1|A|C|2762
9S7D|1|A|U|2763
9S7D|1|A|A|2764
9S7D|1|A|A|2765
9S7D|1|A|C|2766
9S7D|1|A|A|2767
9S7D|1|A|A|2768
9S7D|1|A|A|2769
*
9S7D|1|A|U|2778
9S7D|1|A|C|2779
9S7D|1|A|C|2780
9S7D|1|A|U|2781
9S7D|1|A|A|2782
9S7D|1|A|A|2783
9S7D|1|A|A|2784
9S7D|1|A|C|2785
9S7D|1|A|U|2786
9S7D|1|A|A|2787
9S7D|1|A|C|2788
9S7D|1|A|C|2789
9S7D|1|A|A|2790
9S7D|1|A|A|2791
9S7D|1|A|A|2792
9S7D|1|A|C|2793
9S7D|1|A|C|2794
9S7D|1|A|U|2795

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9m

Chain X

Large ribosomal subunit protein bL28m

Chain z

Large ribosomal subunit protein uL1m