IL_9S7D_044

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_044 not in the Motif Atlas

Homologous match to IL_7A0S_083

Geometric discrepancy: 0.1548

The information below is about IL_7A0S_083

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9S7D|1|A|A|2940
9S7D|1|A|G|2941
*
9S7D|1|A|C|2985
9S7D|1|A|C|2986
9S7D|1|A|U|2987

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Aw

Transfer RNA; tRNA

Chain E

Large ribosomal subunit protein uL3m