IL_9S7D_047
3D structure
- PDB id
- 9S7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9S7D_047 not in the Motif Atlas
- Homologous match to IL_7A0S_086
- Geometric discrepancy: 0.168
- The information below is about IL_7A0S_086
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.4
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 25
Unit IDs
9S7D|1|A|A|2946
9S7D|1|A|U|2947
9S7D|1|A|C|2948
*
9S7D|1|A|G|2976
9S7D|1|A|G|2977
9S7D|1|A|U|2978
9S7D|1|A|U|2979
9S7D|1|A|U|2980
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain Aw
- Transfer RNA; tRNA
- Chain I
- Large ribosomal subunit protein uL10m
- Chain N
- Large ribosomal subunit protein uL16m
- Chain o
- Large ribosomal subunit protein mL63
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