IL_9S7D_048

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCU*AACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_048 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3807

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9S7D|1|A|U|2953
9S7D|1|A|C|2954
9S7D|1|A|U|2955
*
9S7D|1|A|A|2968
9S7D|1|A|A|2969
9S7D|1|A|C|2970
9S7D|1|A|A|2971

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36m

Chain Aw

Transfer RNA; tRNA

Chain N

Large ribosomal subunit protein uL16m