IL_9S7D_076

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUCACCCCCUCCCCAAU*AACAUAU

Length

24 nucleotides

Bulged bases

9S7D|1|AA|C|307, 9S7D|1|AA|C|312, 9S7D|1|AA|C|313, 9S7D|1|AA|U|314, 9S7D|1|AA|C|315, 9S7D|1|AA|A|319, 9S7D|1|AA|A|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S7D|1|AA|A|305
9S7D|1|AA|U|306
9S7D|1|AA|C|307
9S7D|1|AA|A|308
9S7D|1|AA|C|309
9S7D|1|AA|C|310
9S7D|1|AA|C|311
9S7D|1|AA|C|312
9S7D|1|AA|C|313
9S7D|1|AA|U|314
9S7D|1|AA|C|315
9S7D|1|AA|C|316
9S7D|1|AA|C|317
9S7D|1|AA|C|318
9S7D|1|AA|A|319
9S7D|1|AA|A|320
9S7D|1|AA|U|321
*
9S7D|1|AA|A|389
9S7D|1|AA|A|390
9S7D|1|AA|C|391
9S7D|1|AA|A|392
9S7D|1|AA|U|393
9S7D|1|AA|A|394
9S7D|1|AA|U|395

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A2

Small ribosomal subunit protein mS37

Chain AE

Small ribosomal subunit protein bS6m

Chain AJ

Small ribosomal subunit protein uS12m

Chain AL

Small ribosomal subunit protein uS15m

Chain AN

Small ribosomal subunit protein uS17m

Chain AP

Small ribosomal subunit protein bS18m

Chain AQ

Small ribosomal subunit protein bS21m

Chain AS

Small ribosomal subunit protein mS23

Chain AT

Small ribosomal subunit protein mS25