IL_9S7D_083

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_083 not in the Motif Atlas

Geometric match to IL_8CRE_425

Geometric discrepancy: 0.0865

The information below is about IL_8CRE_425

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9S7D|1|AA|A|462
9S7D|1|AA|A|463
9S7D|1|AA|C|464
*
9S7D|1|AA|G|483
9S7D|1|AA|C|484
9S7D|1|AA|U|485

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A2

Small ribosomal subunit protein mS37

Chain AD

Small ribosomal subunit protein uS5m

Chain AJ

Small ribosomal subunit protein uS12m

Chain AN

Small ribosomal subunit protein uS17m

Chain AT

Small ribosomal subunit protein mS25