IL_9S7D_086

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGU*GC

Length

5 nucleotides

Bulged bases

9S7D|1|AA|G|532

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_086 not in the Motif Atlas

Homologous match to IL_8B0X_039

Geometric discrepancy: 0.4543

The information below is about IL_8B0X_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9S7D|1|AA|G|531
9S7D|1|AA|G|532
9S7D|1|AA|U|533
*
9S7D|1|AA|G|827
9S7D|1|AA|C|828

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A2

Small ribosomal subunit protein mS37

Chain Az

mRNA (Visualization example)