IL_9S7D_098

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

9S7D|1|AA|C|837, 9S7D|1|AA|U|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_098 not in the Motif Atlas

Homologous match to IL_8B0X_057

Geometric discrepancy: 0.1083

The information below is about IL_8B0X_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9S7D|1|AA|C|836
9S7D|1|AA|C|837
9S7D|1|AA|G|838
*
9S7D|1|AA|C|919
9S7D|1|AA|A|920
9S7D|1|AA|U|921
9S7D|1|AA|G|922

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A3

Small ribosomal subunit protein bS22, mitochondrial

Chain AG

Small ribosomal subunit protein uS9m

Chain Ax

Transfer RNA; tRNA

Chain Az

mRNA (Visualization example)