IL_9S7D_100
3D structure
- PDB id
- 9S7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9S7D_100 not in the Motif Atlas
- Homologous match to IL_8B0X_177
- Geometric discrepancy: 0.1274
- The information below is about IL_8B0X_177
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9S7D|1|AA|G|842
9S7D|1|AA|U|843
9S7D|1|AA|C|844
*
9S7D|1|AA|G|912
9S7D|1|AA|U|913
9S7D|1|AA|C|914
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Small ribosomal subunit protein bS22, mitochondrial
- Chain AJ
- Small ribosomal subunit protein uS12m
- Chain Aw
- Transfer RNA; tRNA
- Chain Ax
- Transfer RNA; tRNA
- Chain Az
- mRNA (Visualization example)
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