IL_9S7E_015

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

9S7E|1|A|A|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7E_015 not in the Motif Atlas

Homologous match to IL_8B0X_096

Geometric discrepancy: 0.1896

The information below is about IL_8B0X_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9S7E|1|A|G|2145
9S7E|1|A|A|2146
9S7E|1|A|G|2147
*
9S7E|1|A|C|2254
9S7E|1|A|C|2255

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain R

Large ribosomal subunit protein bL20m

Chain S

Large ribosomal subunit protein bL21m

Chain T

Large ribosomal subunit protein uL22m

Chain Z

Large ribosomal subunit protein uL30m

Chain b

Large ribosomal subunit protein mL43

Chain j

Large ribosomal subunit protein mL52