IL_9SLG_086

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9SLG|1|a|G|778, 9SLG|1|a|A|790, 9SLG|1|a|A|791, 9SLG|1|a|U|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_086 not in the Motif Atlas

Geometric match to IL_9H3G_039

Geometric discrepancy: 0.1375

The information below is about IL_9H3G_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9SLG|1|a|G|777
9SLG|1|a|G|778
9SLG|1|a|G|779
*
9SLG|1|a|C|789
9SLG|1|a|A|790
9SLG|1|a|A|791
9SLG|1|a|U|792
9SLG|1|a|C|793

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain r

Large ribosomal subunit protein uL22