IL_9SLG_113

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9SLG|1|a|G|1334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_113 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2552

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9SLG|1|a|C|1321
9SLG|1|a|C|1322
9SLG|1|a|A|1323
9SLG|1|a|A|1324
9SLG|1|a|C|1325
*
9SLG|1|a|G|1333
9SLG|1|a|G|1334
9SLG|1|a|G|1335

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22