IL_9SLG_122

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_122 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5288

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9SLG|1|a|U|1476
9SLG|1|a|G|1477
9SLG|1|a|U|1478
9SLG|1|a|A|1479
9SLG|1|a|G|1480
*
9SLG|1|a|U|1515
9SLG|1|a|G|1516
9SLG|1|a|A|1517
9SLG|1|a|G|1518
9SLG|1|a|G|1519

Current chains

Chain a

23S ribosomal RNA

Nearby chains