IL_9SLG_134

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9SLG|1|a|C|1734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_134 not in the Motif Atlas

Geometric match to IL_8B0X_130

Geometric discrepancy: 0.177

The information below is about IL_8B0X_130

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9SLG|1|a|C|1729
9SLG|1|a|C|1730
*
9SLG|1|a|G|1733
9SLG|1|a|C|1734
9SLG|1|a|G|1735

Current chains

Chain a

23S ribosomal RNA

Nearby chains