IL_9SLG_165

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9SLG|1|a|G|2580, 9SLG|1|a|A|2581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_165 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.2517

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9SLG|1|a|C|2514
9SLG|1|a|U|2515
9SLG|1|a|C|2516
*
9SLG|1|a|G|2578
9SLG|1|a|C|2579
9SLG|1|a|G|2580
9SLG|1|a|A|2581
9SLG|1|a|G|2582

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain z

Large ribosomal subunit protein bL32