IL_9SPF_017

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9SPF|1|L5|G|409, 9SPF|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|G|387
9SPF|1|L5|A|388
9SPF|1|L5|A|389
9SPF|1|L5|C|390
*
9SPF|1|L5|G|401
9SPF|1|L5|A|402
9SPF|1|L5|G|403
9SPF|1|L5|U|404
9SPF|1|L5|U|405
9SPF|1|L5|C|406
9SPF|1|L5|A|407
9SPF|1|L5|A|408
9SPF|1|L5|G|409
9SPF|1|L5|A|410
9SPF|1|L5|G|411
9SPF|1|L5|G|412
9SPF|1|L5|G|413
9SPF|1|L5|C|414

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39