IL_9SPF_018

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGAAAC*G(OMU)GGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|G|415
9SPF|1|L5|U|416
9SPF|1|L5|G|417
9SPF|1|L5|A|418
9SPF|1|L5|A|419
9SPF|1|L5|A|420
9SPF|1|L5|C|421
*
9SPF|1|L8|G|13
9SPF|1|L8|OMU|14
9SPF|1|L8|G|15
9SPF|1|L8|G|16
9SPF|1|L8|A|17
9SPF|1|L8|U|18
9SPF|1|L8|C|19

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Le

60S ribosomal protein L32