IL_9SPF_028
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AAGG*CAGCAGCACU
- Length
- 14 nucleotides
- Bulged bases
- 9SPF|1|L5|A|932, 9SPF|1|L5|C|934, 9SPF|1|L5|A|935, 9SPF|1|L5|C|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|A|732
9SPF|1|L5|A|733
9SPF|1|L5|G|734
9SPF|1|L5|G|735
*
9SPF|1|L5|C|928
9SPF|1|L5|A|929
9SPF|1|L5|G|930
9SPF|1|L5|C|931
9SPF|1|L5|A|932
9SPF|1|L5|G|933
9SPF|1|L5|C|934
9SPF|1|L5|A|935
9SPF|1|L5|C|936
9SPF|1|L5|U|937
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LM
- 60S ribosomal protein L14
- Chain LS
- 60S ribosomal protein L18a
Coloring options: