IL_9SPF_046
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9SPF|1|L5|A|1650, 9SPF|1|L5|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|OMG|1522
9SPF|1|L5|A|1523
9SPF|1|L5|A2M|1524
9SPF|1|L5|A|1525
9SPF|1|L5|G|1526
*
9SPF|1|L5|C|1648
9SPF|1|L5|U|1649
9SPF|1|L5|A|1650
9SPF|1|L5|G|1651
9SPF|1|L5|U|1652
9SPF|1|L5|A|1653
9SPF|1|L5|G|1654
9SPF|1|L5|C|1655
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lj
- Large ribosomal subunit protein eL37
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