IL_9SPF_070
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9SPF|1|L5|C|1935, 9SPF|1|L5|G|1940, 9SPF|1|L5|A|2041, 9SPF|1|L5|U|2044, 9SPF|1|L5|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|G|1933
9SPF|1|L5|A|1934
9SPF|1|L5|C|1935
9SPF|1|L5|C|1936
9SPF|1|L5|C|1937
9SPF|1|L5|C|1938
9SPF|1|L5|A|1939
9SPF|1|L5|G|1940
9SPF|1|L5|A|1941
9SPF|1|L5|A|1942
9SPF|1|L5|A|1943
9SPF|1|L5|A|1944
*
9SPF|1|L5|U|2038
9SPF|1|L5|G|2039
9SPF|1|L5|A|2040
9SPF|1|L5|A|2041
9SPF|1|L5|A|2042
9SPF|1|L5|A|2043
9SPF|1|L5|U|2044
9SPF|1|L5|G|2045
9SPF|1|L5|G|2046
9SPF|1|L5|A|2047
9SPF|1|L5|U|2048
9SPF|1|L5|G|2049
9SPF|1|L5|G|2050
9SPF|1|L5|C|2051
9SPF|1|L5|G|2052
9SPF|1|L5|C|2053
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LI
- 60S ribosomal protein L10
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lm
- Ubiquitin-ribosomal protein eL40 fusion protein
Coloring options: