IL_9SPF_099

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9SPF|1|L5|A|3663, 9SPF|1|L5|U|3679, 9SPF|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|C|3660
9SPF|1|L5|G|3661
9SPF|1|L5|A|3662
9SPF|1|L5|A|3663
9SPF|1|L5|G|3664
9SPF|1|L5|G|3665
*
9SPF|1|L5|U|3677
9SPF|1|L5|G|3678
9SPF|1|L5|U|3679
9SPF|1|L5|U|3680
9SPF|1|L5|G|3681
9SPF|1|L5|A|3682
9SPF|1|L5|C|3683
9SPF|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA