IL_9SPF_106

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9SPF|1|L5|A2M|3785, 9SPF|1|L5|C|3791, 9SPF|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|C|3781
9SPF|1|L5|5MC|3782
9SPF|1|L5|A|3783
9SPF|1|L5|A|3784
9SPF|1|L5|A2M|3785
9SPF|1|L5|U|3786
9SPF|1|L5|G|3787
9SPF|1|L5|C|3788
9SPF|1|L5|C|3789
9SPF|1|L5|U|3790
9SPF|1|L5|C|3791
9SPF|1|L5|OMG|3792
*
9SPF|1|L5|OMC|3808
9SPF|1|L5|G|3809
9SPF|1|L5|C|3810
9SPF|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA