IL_9SPF_134

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(A2M)UC*(OMG)U(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SPF_134 not in the Motif Atlas

Homologous match to IL_8GLP_316

Geometric discrepancy: 0.0582

The information below is about IL_8GLP_316

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9SPF|1|L5|A2M|4590
9SPF|1|L5|U|4591
9SPF|1|L5|C|4592
*
9SPF|1|L5|OMG|4618
9SPF|1|L5|U|4619
9SPF|1|L5|OMU|4620

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23