IL_9SPF_220

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

9SPF|1|S2|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|G|1206
9SPF|1|S2|G|1207
9SPF|1|S2|A|1208
*
9SPF|1|S2|U|1691
9SPF|1|S2|PSU|1692

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Mr

synthetic mRNA

Chain Pt

Transfer RNA; tRNA

Chain Sa

40S ribosomal protein S26