IL_9SPF_225

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GACAGGA(OMU)UG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9SPF|1|S2|G|1285

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|G|1281
9SPF|1|S2|A|1282
9SPF|1|S2|C|1283
9SPF|1|S2|A|1284
9SPF|1|S2|G|1285
9SPF|1|S2|G|1286
9SPF|1|S2|A|1287
9SPF|1|S2|OMU|1288
9SPF|1|S2|U|1289
9SPF|1|S2|G|1290
*
9SPF|1|S2|C|1309
9SPF|1|S2|U|1310
9SPF|1|S2|C|1311
9SPF|1|S2|G|1312
9SPF|1|S2|A|1313
9SPF|1|S2|U|1314
9SPF|1|S2|U|1315
9SPF|1|S2|C|1316

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin