IL_9SPI_014

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9SPI|1|L5|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SPI_014 not in the Motif Atlas

Homologous match to IL_8GLP_016

Geometric discrepancy: 0.0436

The information below is about IL_8GLP_016

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9SPI|1|L5|G|199
9SPI|1|L5|U|200
9SPI|1|L5|C|201
*
9SPI|1|L5|G|214
9SPI|1|L5|C|215

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26