IL_9SPI_033

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SPI_033 not in the Motif Atlas

Homologous match to IL_8GLP_047

Geometric discrepancy: 0.0867

The information below is about IL_8GLP_047

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9SPI|1|L5|G|1173
9SPI|1|L5|G|1174
9SPI|1|L5|A|1175
*
9SPI|1|L5|U|1186
9SPI|1|L5|G|1187
9SPI|1|L5|C|1188

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5